環境資源報告成果查詢系統

量子點奈米基因指紋鑑定系統應用於環境微生物之分析

中文摘要 本「量子點奈米基因指紋鑑定系統應用於環境微生物之分析」計畫為一改進計畫,乃針對過去兩年開發的新微生物檢測技術增加新功能提升應用性。此技術是利用量子粒的特性配合微珠嵌連之專一性單股核酸探針,來同時解決定性、定量與標定問題,並期望簡化檢體製備流程,提供一全新技術解決現行微生物檢測的問題。環境微生物鑑識是環境保護的措施上,很重要的一環,因為透過精準快速的鑑識,及時找到汙染源及汙染者,才能有效阻止污染環境的擴大。然而傳統標準方法為”以選擇性培養基”計算指標微生物的數目。傳統標準方法的缺點為不易定量與培養時間長(通常為2~3天),更糟的是,水樣環境微生物超過千種,且不到1%的菌種可被培養出。為了解決鑑定與定量的困難,因此,我們團隊積極開發新的檢測技術;我們借鏡前年與去年的環保署計畫(我們團隊執行的計畫),開發完成之「新一代的「退伍軍人菌」的量子點基因檢測系統」,重新設計並保留原來特性與優勢且增加DNA指紋鑑定功能。此一新設計為創新技術,並未見於任何文獻與產品。此系統將可解決傳統晶片定量問題並免除基因放大(PCR)的步驟,因而可以節省時間、簡化流程以更利於檢驗室的作業,但保有專一性與敏感度,期待此一新技術的開發完成可達成(1)高專一性(2) 高敏感度(3)準確定量(4) DNA指紋鑑定菌屬等功能來分析水樣環境微生物汙染菌群。我們依預定計畫完成 1) 微珠PMMA 接上10種微生物之專一性單股核酸序列之製備, 2) 完成Click反應進行量子點對DNA序列與探針(10種微生物各有internal control probe及reporter probe, 計20種探針)的結合,3) 完成10種微生物對量子點基因檢測系統之定量與定性測試, 完成微生物之專一性測試,專一性達100%,無偽陽性,完成微生物之敏感性測試,無偽陰性,4) 完成10種微生物之量子點基因檢測系統-DNA指紋鑑定的技術開發與建置,5) 完成10種微生物之量子點基因檢測系統-DNA指紋鑑定的偵測極限,偵測極限均達1ng,6) 完成10種微生物之量子點基因檢測系統-DNA指紋鑑定之定量測試,而定量標準曲線之線性均在r2=0.9以上,7) 完成10種微生物個別之量子點基因檢測系統-DNA指紋鑑定之專一性測試,無偽陽性與敏感性測試,無偽陰性。這些執行進度完成符合契約書的期末預定進度。
中文關鍵字 指紋鑑定;量子點;專一性單股核酸探針

基本資訊

專案計畫編號 EPA-102-U1U4-04-001 經費年度 102 計畫經費 1500 千元
專案開始日期 2013/03/28 專案結束日期 2013/11/30 專案主持人 陳中庸
主辦單位 永續發展室(停用) 承辦人 林燕柔 執行單位 鴻洺科技有限公司

成果下載

類型 檔名 檔案大小 說明
期末報告 量子點奈米基因指紋鑑定系統應用於環境微生物之分析(公開版).pdf 2MB

Quantum Dots-Finger Printing Detection System for Environmental Microbes.

英文摘要 The main purpose of this project is to improve the previous project which adopted quantum dots and microbeads to generate new technology for detection environmental microorganisms. The new technology aims to measure the quantity and quality by simple labeled methods thus the detection procedure will be short and faster than current methods, such as DNA chips. We proposed the quantum dot probes combined with microbead linked specific oligonucleotides following finger printing patterns as detection system that will be able to provide higher sensitivity and specificity with qualitative detection and quantitative determination. For detection of environmental microbes is the important issue to trace the pollution of environment. The tranditional methods required couple days to culture and verify, however, many microbes cannot be culture. Our novel technology ‘Quantum Dots-Finter Pringing Detection System’ is able to detect directly from water sample without culture or gene amplification. We selected 10 environmental bacterial spp and 4 adenovirus types as our research targets. Currently, we have followed the schedule of project to achieve : 1) microbead- Poly-methyl methacrylate (PMMA), 22~24 m, was linked with specific oligonucleotides from 10 environmental bacterial genuses, 2) quantum dots were linked to oligonucleotides (inrernal control and reporter for 10 environmental bacterial genuses individually) probes by click reaction, 3) The detection limit, qualitative detection and quantitative determination of microbed-quantum dot system were tested for each bacterial genuses, 4) the system of microbed-quantum dot-RFLP was tested and their standard protocols were made, 5) the detection limit of microbed-quantum dot-RFLP system for each bacterial genus was confirmed, all of those 10 environmental bacterial genuses can reach 1ng of detection limit to our system, 6) the linear regression of microbed-quantum dot-RFLP system for each bacterial genus was confirmed, all of those 10 environmental bacterial genuses’s linear regression over r2=0.9, 7) the sensitivity and specificity of microbed-quantum dot-RFLP system for each bacterial genus was confirmed, no false positive and false negative occured . These data have matched the requirement of the EPA proposal.
英文關鍵字 Finger printing;Quantum dots;Single oligonucleotide specific probes